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Showing 106 results

Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America

Author

Gutierrez, Bernardo; Castelán Sánchez, Hugo G.; Candido, Darlan da Silva; Jackson, Ben; Fleishon, Shay; Houzet, Renaud; Ruis, Christopher; Delaye, Luis; Faria, Nuno R.; Rambaut, Andrew and 2 others

Source

Cell Host & Microbe

Type

Journal article

Published

10 August 2022
Genomic investigations of acute hepatitis of unknown aetiology in children

Author

Morfopoulou, Sofia; Buddle, Sarah; Montaguth, Oscar Enrique Torres; Atkinson, Laura; Assuncao, Jose Afonso Guerra; Storey, Nathaniel; Roy, Sunando; Lennon, Alexander; Lee, Jack C. D.; Williams, Rachel and 53 others

Source

medRxiv

Type

Journal article

Published

28 July 2022
Genomic epidemiology of SARS-CoV-2 in a university outbreak setting and implications for public health planning

Author

Nickbakhsh, Sema; Hughes, Joseph; Christofidis, Nicolaos; Griffiths, Emily; Shaaban, Sharif; Enright, Jessica; Smollett, Katherine; Nomikou, Kyriaki; Palmalux, Natasha; Tong, Lily and 14 others

Source

Scientific Reports

Type

Journal article

Published

19 July 2022
gofasta: Command-line utilities for genomic epidemiology research

Author

Jackson, Ben

Source

Bioinformatics

Type

Journal article

Published

05 July 2022
Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Author

Tegally, Houriiyah; Moir, Monika; Everatt, Josie; Giovanetti, Marta; Scheepers, Cathrine; Wilkinson, Eduan; Subramoney, Kathleen; Makatini, Zinhle; Moyo, Sikhulile; Amoako, Daniel G. and 47 others

Source

Nature Medicine

Type

Journal article

Published

27 June 2022
Using species A rotavirus reverse genetics to engineer chimeric viruses expressing SARS-CoV-2 spike epitopes: Heterologous viral peptide expression by rotavirus A

Author

Diebold, Ola; Gonzalez-martinez, Victoria; Venditti, Luca; Sharp, Colin; Blake, Rosemary; Tan, Spring; Stevens, Jo; Caddy, Sarah L.; Digard, Paul; Borodavka, Alexander and 1 other

Source

Journal of Virology

Type

Journal article

Published

27 June 2022
Transmission networks of SARS-CoV-2 in Coastal Kenya during the first two waves: a retrospective genomic study

Author

Agoti, Charles N; Ochola-Oyier, Lynette I.; Dellicour, Simon; Mohammed, Khadija Said; Lambisia, Arnold W.; de Laurent, Zaydah R; Morobe, John M.; Mburu, Maureen W.; Omuoyo, Donwilliams O.; Ong'era, Edidah M. and 26 others

Source

eLife

Type

Journal article

Published

14 June 2022
Multiomic analysis reveals cell-type-specific molecular determinants of COVID-19 severity

Author

Zhang, Sai; Cooper-Knock, Johnathan; Weimer, Annika K; Shi, Minyi; Kozhaya, Lina; Unutmaz, Derya; Harvey, Calum; Julian, Thomas H; Furini, Simone; Frullanti, Elisa and 10 others

Source

Cell Systems

Type

Journal article

Published

03 June 2022
Analysis of SARS-CoV-2 known and novel subgenomic mRNAs in cell culture, animal model, and clinical samples using LeTRS, a bioinformatic tool to identify unique sequence identifiers

Author

Dong, Xiaofeng; Penrice-Randal, Rebekah; Goldswain, Hannah; Prince, Tessa; Randle, Nadine P.; Donovan-Banfield, I'ah; Salguero, Francisco J; Tree, Julia; Vamos, Ecaterina; Nelson, Charlotte and 11 others

Source

GigaScience

Type

Journal article

Published

26 May 2022
Refolding of lid subdomain of SARS-CoV-2 nsp14 upon nsp10 interaction releases exonuclease activity

Author

Czarna, Anna; Plewka, Jacek; Kresik, Leanid; Matsuda, Alex; Karim, Abdulkarim J; Robinson, Colin; O'Byrne, Sean; Cunningham, Fraser; Georgiou, Irene; Wilk, Piotr and 5 others

Source

Structure

Type

Journal article

Published

23 May 2022