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  • Coronavirus (COVID-19) (22)
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  • Journal article (22)

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Showing 22 results

  • Genomics-informed outbreak investigations of SARS-CoV-2 using civet

    Author
    O’Toole, Áine; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel; Rooke, Stefan; McCrone, J. T.; Duggan, Kate; McHugh, Martin P. and 12 others
    Source
    PLOS Global Public Health
    Type
    Journal article
    Published
    09 December 2022
  • The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

    Author
    Hill, Verity; du Plessis, Louis; Peacock, Thomas P.; Aggarwal, Dinesh; Colquhoun, Rachel; Carabelli, Alesandro M; Ellaby, Nicholas; Gallagher, Eileen; Groves, Natalie; Jackson, Ben and 19 others
    Source
    Virus Evolution
    Type
    Journal article
    Published
    26 August 2022
  • Context-specific emergence and growth of the SARS-CoV-2 Delta variant

    Author
    McCrone, John T; Hill, Verity; Bajaj, Sumali; Pena, Rosario Evans; Lambert, Ben C; Inward, Rhys; Bhatt, Samir; Volz, Erik; Ruis, Christopher; Dellicour, Simon and 30 others
    Source
    Nature
    Type
    Journal article
    Published
    11 August 2022
  • Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America

    Author
    Gutierrez, Bernardo; Castelán Sánchez, Hugo G.; Candido, Darlan da Silva; Jackson, Ben; Fleishon, Shay; Houzet, Renaud; Ruis, Christopher; Delaye, Luis; Faria, Nuno R.; Rambaut, Andrew and 2 others
    Source
    Cell Host & Microbe
    Type
    Journal article
    Published
    10 August 2022
  • gofasta: Command-line utilities for genomic epidemiology research

    Author
    Jackson, Ben
    Source
    Bioinformatics
    Type
    Journal article
    Published
    05 July 2022
  • Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

    Author
    Tegally, Houriiyah; Moir, Monika; Everatt, Josie; Giovanetti, Marta; Scheepers, Cathrine; Wilkinson, Eduan; Subramoney, Kathleen; Makatini, Zinhle; Moyo, Sikhulile; Amoako, Daniel G. and 47 others
    Source
    Nature Medicine
    Type
    Journal article
    Published
    27 June 2022
  • Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer

    Author
    Wright, Derek W.; Harvey, William T.; Hughes, Joseph; Cox, MacGregor; Peacock, Thomas P.; Colquhoun, Rachel M.; Jackson, Ben; Orton, Richard J.; The COVID-19 Genomics UK (COG-UK) Consortium; Harrison, Ewan M. and 5 others
    Source
    Virus Evolution
    Type
    Journal article
    Published
    18 March 2022
  • Context specific emergence and growth of the SARS-CoV-2 Delta variant [Preprint]

    Author
    McCrone, John T.; Hill, Verity; Bajaj, Sumali; Pena, Rosario Evans; Lambert, Ben C.; Inward, Rhys; Bhatt, Samir; Volz, Erik; Ruis, Christopher; Dellicour, Simon and 31 others
    Source
    medRvix
    Type
    Journal article
    Published
    21 December 2021
  • Genomic reconstruction of the SARS-CoV-2 epidemic in England

    Author
    Vöhringer, Harald S.; Sanderson, Theo; Sinnott, Matthew; De Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V. and 923 others
    Source
    Nature
    Type
    Journal article
    Published
    16 December 2021
  • Genomics informed outbreak investigations of SARS-CoV-2 using civet [preprint]

    Author
    O'Toole, Áine Niamh; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel; Rooke, Stefan; McCrone, John T.; McHugh, Martin P.; Nicholls, Samuel M. and 11 others
    Source
    medRvix
    Type
    Journal article
    Published
    14 December 2021
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