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Showing 22 results

Genomics-informed outbreak investigations of SARS-CoV-2 using civet

Author

O’Toole, Áine; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel; Rooke, Stefan; McCrone, J. T.; Duggan, Kate; McHugh, Martin P. and 12 others

Source

PLOS Global Public Health

Type

Journal article

Published

09 December 2022
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Author

Hill, Verity; du Plessis, Louis; Peacock, Thomas P.; Aggarwal, Dinesh; Colquhoun, Rachel; Carabelli, Alesandro M; Ellaby, Nicholas; Gallagher, Eileen; Groves, Natalie; Jackson, Ben and 19 others

Source

Virus Evolution

Type

Journal article

Published

26 August 2022
Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Author

McCrone, John T; Hill, Verity; Bajaj, Sumali; Pena, Rosario Evans; Lambert, Ben C; Inward, Rhys; Bhatt, Samir; Volz, Erik; Ruis, Christopher; Dellicour, Simon and 30 others

Source

Nature

Type

Journal article

Published

11 August 2022
Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America

Author

Gutierrez, Bernardo; Castelán Sánchez, Hugo G.; Candido, Darlan da Silva; Jackson, Ben; Fleishon, Shay; Houzet, Renaud; Ruis, Christopher; Delaye, Luis; Faria, Nuno R.; Rambaut, Andrew and 2 others

Source

Cell Host & Microbe

Type

Journal article

Published

10 August 2022
gofasta: Command-line utilities for genomic epidemiology research

Author

Jackson, Ben

Source

Bioinformatics

Type

Journal article

Published

05 July 2022
Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Author

Tegally, Houriiyah; Moir, Monika; Everatt, Josie; Giovanetti, Marta; Scheepers, Cathrine; Wilkinson, Eduan; Subramoney, Kathleen; Makatini, Zinhle; Moyo, Sikhulile; Amoako, Daniel G. and 47 others

Source

Nature Medicine

Type

Journal article

Published

27 June 2022
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer

Author

Wright, Derek W.; Harvey, William T.; Hughes, Joseph; Cox, MacGregor; Peacock, Thomas P.; Colquhoun, Rachel M.; Jackson, Ben; Orton, Richard J.; The COVID-19 Genomics UK (COG-UK) Consortium; Harrison, Ewan M. and 5 others

Source

Virus Evolution

Type

Journal article

Published

18 March 2022
Context specific emergence and growth of the SARS-CoV-2 Delta variant [Preprint]

Author

McCrone, John T.; Hill, Verity; Bajaj, Sumali; Pena, Rosario Evans; Lambert, Ben C.; Inward, Rhys; Bhatt, Samir; Volz, Erik; Ruis, Christopher; Dellicour, Simon and 31 others

Source

medRvix

Type

Journal article

Published

21 December 2021
Genomic reconstruction of the SARS-CoV-2 epidemic in England

Author

Vöhringer, Harald S.; Sanderson, Theo; Sinnott, Matthew; De Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V. and 923 others

Source

Nature

Type

Journal article

Published

16 December 2021
Genomics informed outbreak investigations of SARS-CoV-2 using civet [preprint]

Author

O'Toole, Áine Niamh; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel; Rooke, Stefan; McCrone, John T.; McHugh, Martin P.; Nicholls, Samuel M. and 11 others

Source

medRvix

Type

Journal article

Published

14 December 2021