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Showing 25 results

SCORPIO: a utility for defining and classifying mutation constellations of virus genomes

Author

Jackson, Ben; O'Toole, Áine Niamh; Rambaut, Andrew; Colquhoun, Rachel M.

Source

Bioinformatics

Type

Journal article

Published

15 September 2023
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Author

Tsui, Joseph; McCrone, John T.; Lambert, Ben C.; Bajaj, Sumali; Inward, Rhys; Bosetti, Paolo; Pena, Rosario Evans; Tegally, Houriiyah; Hill, Verity; Zarebski, Alexander E. and 30 others

Source

Science

Type

Journal article

Published

20 July 2023
Genomics-informed outbreak investigations of SARS-CoV-2 using civet

Author

O'Toole, Áine Niamh; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel M.; Rooke, Stefan; McCrone, John T.; Duggan, Kate; McHugh, Martin P. and 12 others

Source

PLOS Global Public Health

Type

Journal article

Published

09 December 2022
The origins and molecular evolution of SARS-CoV-2 lineage B.1.1.7 in the UK

Author

Hill, Verity; du Plessis, Louis; Peacock, Thomas P.; Aggarwal, Dinesh; Colquhoun, Rachel M.; Carabelli, Alessandro M.; Ellaby, Nicholas; Gallagher, Eileen; Groves, Natalie; Jackson, Ben and 19 others

Source

Virus Evolution

Type

Journal article

Published

26 August 2022
Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Author

McCrone, John T.; Hill, Verity; Bajaj, Sumali; Pena, Rosario Evans; Lambert, Ben C.; Inward, Rhys; Bhatt, Samir; Volz, Erik; Ruis, Christopher; Dellicour, Simon and 30 others

Source

Nature

Type

Journal article

Published

11 August 2022
Emergence and widespread circulation of a recombinant SARS-CoV-2 lineage in North America

Author

Gutierrez, Bernardo; Castelán Sánchez, Hugo G.; da Silva Candido, Darlan; Jackson, Ben; Fleishon, Shay; Houzet, Renaud; Ruis, Christopher; Delaye, Luis; Faria, Nuno Rodrigues; Rambaut, Andrew and 2 others

Source

Cell Host & Microbe

Type

Journal article

Published

10 August 2022
gofasta: Command-line utilities for genomic epidemiology research

Author

Jackson, Ben

Source

Bioinformatics

Type

Journal article

Published

05 July 2022
Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Author

Tegally, Houriiyah; Moir, Monika; Everatt, Josie; Giovanetti, Marta; Scheepers, Cathrine; Wilkinson, Eduan; Subramoney, Kathleen; Makatini, Zinhle; Moyo, Sikhulile; Amoako, Daniel G. and 47 others

Source

Nature Medicine

Type

Journal article

Published

27 June 2022
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer

Author

Wright, Derek W.; Harvey, William T.; Hughes, Joseph; Cox, MacGregor; Peacock, Thomas P.; Colquhoun, Rachel M.; Jackson, Ben; Orton, Richard J.; The COVID-19 Genomics UK (COG-UK) Consortium; Harrison, Ewen M. and 5 others

Source

Virus Evolution

Type

Journal article

Published

18 March 2022
Context specific emergence and growth of the SARS-CoV-2 Delta variant [Preprint]

Author

McCrone, John T.; Hill, Verity; Bajaj, Sumali; Pena, Rosario Evans; Lambert, Ben C.; Inward, Rhys; Bhatt, Samir; Volz, Erik; Ruis, Christopher; Dellicour, Simon and 31 others

Source

medRvix

Type

Journal article

Published

21 December 2021