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Showing 16 results

Development of an amplicon-based sequencing approach in response to the global emergence of mpox

Author

Chen, Nicholas F.G.; Chaguza, Chrispin; Gagne, Luc; Doucette, Matthew; Smole, Sandra; Buzby, Erika; Hall, Joshua; Ash, Stephanie; Harrington, Rachel; Cofsky, Seana and 61 others

Source

PLoS Biology

Type

Journal article

Published

13 June 2023
Directions of change in intrinsic case severity across successive SARS-CoV-2 variant waves have been inconsistent

Author

Pascall, David J.; Vink, Elen; Blacow, Rachel; Bulteel, Naomi; Campbell, Alasdair; Campbell, Robyn; Clifford, Sarah; Davis, Christopher; da Silva Filipe, Ana; El Sakka, Noha and 28 others

Source

Journal of Infection

Type

Journal article

Published

01 June 2023
Analysis of the ARTIC V4 and V4.1 SARS-CoV-2 primers and their impact on the detection of Omicron BA.1 and BA.2 lineage-defining mutations

Author

Ulhuq, Fatima R; Barge, Madhuri; Falconer, Kerry; Wild, Jonathan; Fernandes, Goncalo; Gallagher, Abbie; McGinley, Suzie; Sugadol, Ahmad; Tariq, Muhammad; Maloney, Daniel and 4 others

Source

Microbial Genomics

Type

Journal article

Published

21 April 2023
The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: a genomics-based retrospective cohort analysis

Author

Pascall, David J.; Vink, Elen; Blacow, Rachel; Bulteel, Naomi; Campbell, Alasdair; Campbell, Robyn; Clifford, Sarah; Davis, Christopher; da Silva Filipe, Ana; El Sakka, Noha and 27 others

Source

PLoS ONE

Type

Journal article

Published

13 April 2023
Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

Author

Cotton, S.; McHugh, Martin P.; Dewar, Rebecca; Haas, Juergen; Templeton, Kate E.; COVID-19 Genomics UK (COG-UK) consortium

Source

Journal of Hospital Infection

Type

Journal article

Published

09 March 2023
Genomics-informed outbreak investigations of SARS-CoV-2 using civet

Author

O'Toole, Áine Niamh; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel M.; Rooke, Stefan; McCrone, John T.; Duggan, Kate; McHugh, Martin P. and 12 others

Source

PLOS Global Public Health

Type

Journal article

Published

09 December 2022
Inconsistent directions of change in case severity across successive SARS-CoV-2 variant waves suggests an unpredictable future

Author

Pascall, David J.; Vink, Elen; Blacow, Rachel; Bulteel, Naomi; Campbell, Alasdair; Campbell, Robyn; Clifford, Sarah; Davis, Christopher; da Silva Filipe, Ana; Sakka, Noha El and 28 others

Source

medRxiv

Type

Journal article

Published

18 August 2022
The SARS-CoV-2 Alpha variant caused increased clinical severity of disease in Scotland: a genomics-based prospective cohort analysis

Author

Pascall, David J.; Mollett, Guy; Vink, Elen; Shepherd, James G.; Williams, Thomas; Wastnedge, Elizabeth; Blacow, Rachel; Hughes, Joseph; Robertson, David L.; Lycett, Samantha J. and 24 others

Source

medRxiv

Type

Journal article

Published

21 February 2022
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

Author

Aggarwal, Dinesh; Warne, Ben; Jahun, Aminu S.; Hamilton, William L.; Fieldman, Tom; du Plessis, Louis; Hill, Verity; Blane, Beth; Watkins, Emmeline; Wright, Elizabeth and 713 others

Source

Nature Communications

Type

Journal article

Published

08 February 2022
Genomic reconstruction of the SARS-CoV-2 epidemic in England

Author

Vöhringer, Harald S.; Sanderson, Theo; Sinnott, Matthew; de Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V. and 923 others

Source

Nature

Type

Journal article

Published

16 December 2021