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  • Coronavirus (COVID-19) (10)
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  • Factors affecting turnaround time of SARS-CoV-2 sequencing for inpatient infection prevention and control decision making: analysis of data from the COG-UK HOCI study

    Author
    Colton, Hayley; Parker, Matthew D.; Stirrup, Oliver; Blackstone, James; Loose, Matthew; McClure, C Patrick; Roy, Sunando; Williams, Charlotte; McLeod, Julie; Smith, Darren and 11 others
    Source
    Journal of Hospital Infection
    Type
    Journal article
    Published
    10 October 2022
  • Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: multicenter, prospective study

    Author
    Stirrup, Oliver; Blackstone, James; Mapp, Fiona; MacNeil, Alyson; Panca, Monica; Holmes, Alison; Machin, Nicholas; Shin, Gee Yen; Mahungu, Tabitha; Saeed, Kordo and 38 others
    Source
    eLife
    Type
    Journal article
    Published
    13 September 2022
  • Protocol for the COG-UK hospital-onset COVID-19 infection (HOCI) multicentre interventional clinical study: evaluating the efficacy of rapid genome sequencing of SARS-CoV-2 in limiting the spread of COVID-19 in UK NHS hospitals

    Author
    Blackstone, James; Stirrup, Oliver; Mapp, Fiona; Panca, Monica; Copas, Andrew J.; Flowers, Paul; Hockey, Leanne; Price, James R.; Partridge, David G.; Peters, Christine and 6 others
    Source
    BMJ Open
    Type
    Journal article
    Published
    19 April 2022
  • Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves

    Author
    Lindsey, Benjamin B.; Villabona-Arenas, Ch Julian; Campbell, Finlay; Keeley, Alexander J.; Parker, Matthew D.; Shah, Dhruv R.; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta and 18 others
    Source
    Nature Communications
    Type
    Journal article
    Published
    17 February 2022
  • Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

    Author
    Aggarwal, Dinesh; Warne, Ben; Jahun, Aminu S.; Hamilton, William L.; Fieldman, Thomas; du Plessis, Louis; Hill, Verity; Blane, Beth; Watkins, Emmeline; Wright, Elizabeth and 713 others
    Source
    Nature Communications
    Type
    Journal article
    Published
    08 February 2022
  • Genomic reconstruction of the SARS-CoV-2 epidemic in England

    Author
    Vöhringer, Harald S.; Sanderson, Theo; Sinnott, Matthew; De Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V. and 923 others
    Source
    Nature
    Type
    Journal article
    Published
    16 December 2021
  • The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study

    Author
    Boshier, Florencia A.T.; Venturini, Cristina; Stirrup, Oliver; Guerra-Assunção, José Afonso; Alcolea-Medina, Adela; Becket, Angela H.; Byott, Matthew; Charalampous, Themoula; Da Silva Filipe, Ana; Frampton, Dan and 35 others
    Source
    Journal of Infection
    Type
    Journal article
    Published
    02 October 2021
  • SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study

    Author
    Stirrup, Oliver; Boshier, Florencia A.T.; Venturini, Cristina; Guerra-Assunção, José Afonso; Alcolea-Medina, Adela; Beckett, Angela; Charalampous, Themoula; Da Silva Filipe, Ana; Glaysher, Sharon; Khan, Tabassum and 33 others
    Source
    BMJ Open Respiratory Research
    Type
    Journal article
    Published
    20 September 2021
  • Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data

    Author
    Stirrup, Oliver; Hughes, Joseph; Parker, Matthew D.; Partridge, David G.; Shepherd, James G.; Blackstone, James; Coll, Francesc; Keeley, Alexander J.; Lindsey, Benjamin B.; Marek, Aleksandra and 6 others
    Source
    eLife
    Type
    Journal article
    Published
    29 June 2021
  • Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data

    Author
    Parker, Matthew D.; Lindsey, Benjamin B.; Leary, Shay; Gaudieri, Silvana; Chopra, Abha; Wyles, Matthew; Angyal, Adrienn; Green, Luke R.; Parsons, Paul J.; Tucker, Rachel M. and 23 others
    Source
    Genome Research
    Type
    Journal article
    Published
    15 March 2021

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