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Showing 10 results

Factors affecting turnaround time of SARS-CoV-2 sequencing for inpatient infection prevention and control decision making: analysis of data from the COG-UK HOCI study

Author

Colton, Hayley; Parker, Matthew D.; Stirrup, Oliver; Blackstone, James; Loose, Matthew; McClure, C Patrick; Roy, Sunando; Williams, Charlotte; McLeod, Julie; Smith, Darren and 11 others

Source

Journal of Hospital Infection

Type

Journal article

Published

10 October 2022
Effectiveness of rapid SARS-CoV-2 genome sequencing in supporting infection control for hospital-onset COVID-19 infection: multicenter, prospective study

Author

Stirrup, Oliver; Blackstone, James; Mapp, Fiona; MacNeil, Alyson; Panca, Monica; Holmes, Alison; Machin, Nicholas; Shin, Gee Yen; Mahungu, Tabitha; Saeed, Kordo and 38 others

Source

eLife

Type

Journal article

Published

13 September 2022
Protocol for the COG-UK hospital-onset COVID-19 infection (HOCI) multicentre interventional clinical study: evaluating the efficacy of rapid genome sequencing of SARS-CoV-2 in limiting the spread of COVID-19 in UK NHS hospitals

Author

Blackstone, James; Stirrup, Oliver; Mapp, Fiona; Panca, Monica; Copas, Andrew J.; Flowers, Paul; Hockey, Leanne; Price, James R.; Partridge, David G.; Peters, Christine and 6 others

Source

BMJ Open

Type

Journal article

Published

19 April 2022
Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves

Author

Lindsey, Benjamin B.; Villabona-Arenas, Ch Julian; Campbell, Finlay; Keeley, Alexander J.; Parker, Matthew D.; Shah, Dhruv R.; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta and 18 others

Source

Nature Communications

Type

Journal article

Published

17 February 2022
Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

Author

Aggarwal, Dinesh; Warne, Ben; Jahun, Aminu S.; Hamilton, William L.; Fieldman, Thomas; du Plessis, Louis; Hill, Verity; Blane, Beth; Watkins, Emmeline; Wright, Elizabeth and 713 others

Source

Nature Communications

Type

Journal article

Published

08 February 2022
Genomic reconstruction of the SARS-CoV-2 epidemic in England

Author

Vöhringer, Harald S.; Sanderson, Theo; Sinnott, Matthew; De Maio, Nicola; Nguyen, Thuy; Goater, Richard; Schwach, Frank; Harrison, Ian; Hellewell, Joel; Ariani, Cristina V. and 923 others

Source

Nature

Type

Journal article

Published

16 December 2021
The Alpha variant was not associated with excess nosocomial SARS-CoV-2 infection in a multi-centre UK hospital study

Author

Boshier, Florencia A.T.; Venturini, Cristina; Stirrup, Oliver; Guerra-Assunção, José Afonso; Alcolea-Medina, Adela; Becket, Angela H.; Byott, Matthew; Charalampous, Themoula; Da Silva Filipe, Ana; Frampton, Dan and 35 others

Source

Journal of Infection

Type

Journal article

Published

02 October 2021
SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study

Author

Stirrup, Oliver; Boshier, Florencia A.T.; Venturini, Cristina; Guerra-Assunção, José Afonso; Alcolea-Medina, Adela; Beckett, Angela; Charalampous, Themoula; Da Silva Filipe, Ana; Glaysher, Sharon; Khan, Tabassum and 33 others

Source

BMJ Open Respiratory Research

Type

Journal article

Published

20 September 2021
Rapid feedback on hospital onset SARS-CoV-2 infections combining epidemiological and sequencing data

Author

Stirrup, Oliver; Hughes, Joseph; Parker, Matthew D.; Partridge, David G.; Shepherd, James G.; Blackstone, James; Coll, Francesc; Keeley, Alexander J.; Lindsey, Benjamin B.; Marek, Aleksandra and 6 others

Source

eLife

Type

Journal article

Published

29 June 2021
Subgenomic RNA identification in SARS-CoV-2 genomic sequencing data

Author

Parker, Matthew D.; Lindsey, Benjamin B.; Leary, Shay; Gaudieri, Silvana; Chopra, Abha; Wyles, Matthew; Angyal, Adrienn; Green, Luke R.; Parsons, Paul J.; Tucker, Rachel M. and 23 others

Source

Genome Research

Type

Journal article

Published

15 March 2021

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