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Showing 58 results

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Author

Pekar, Jonathan E.; Lytras, Spyros; Ghafari, Mahan; Magee, Andrew F.; Parker, Edyth; Wang, Yu; Ji, Xiang; Havens, Jennifer L.; Katzourakis, Aris; Vasylyeva, Tetyana I. and 9 others

Source

Cell

Type

Journal article

Published

07 May 2025
Pathogen genomic surveillance and the AI revolution

Author

Lytras, Spyros; Lamb, Kieran D.; Ito, Jumpei; Grove, Joe; Yuan, Ke; Sato, Kei; Hughes, Joseph; Robertson, David L.

Source

Journal of Virology

Type

Journal article

Published

29 January 2025
Phenotypic evolution of SARS-CoV-2 spike during the COVID-19 pandemic

Author

Furnon, Wilhelm; Cowton, Vanessa M.; de Lorenzo, Giuditta; Orton, Richard J.; Herder, Vanessa; Cantoni, Diego; Ilia, Georgios; Correa Mendonca, Diogo; Kerr, Karen; Allan, Jay and 16 others

Source

Nature Microbiology

Type

Journal article

Published

03 January 2025
Evaluation of risk-based travel policy for the COVID-19 epidemic in Scotland: a population-based surveillance study

Author

McLachlan, Isobel; Huntley, Selene; Leslie, Kirsten; Bishop, Jen; Redman, Christopher; Yebra, Gonzalo; Shabaan, Sharif; Christofidis, Nicolaos; Lycett, Samantha J.; Holden, Matthew T.G. and 4 others

Source

BMJ Open

Type

Journal article

Published

29 November 2024
From a single sequence to evolutionary trajectories: protein language models capture the evolutionary potential of SARS-CoV-2 protein sequences

Author

Lamb, Kieran D.; Hughes, Joseph; Lytras, Spyros; Young, Francesca; Koci, Orges; Herzig, James; Lovell, Simon C.; Grove, Joe; Yuan, Ke; Robertson, David L.

Source

bioRxiv

Type

Journal article

Published

18 September 2024
Whole-System Pandemic Modelling Including Pathogen Evolution

Author

Hinsch, Martin; Silverman, Eric; Robertson, David L.

Source

Advances in Social Simulation

Type

Conference item

Published

21 July 2024
Data and Code for "Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic"

Author

Crits-Christoph, Alexander; Levy, Joshua I.; Pekar, Jonathan E.; Goldstein, Stephen A.; Singh, Reema; Hensel, Zach; Gangavarapu, Karthik; Rogers, Matthew B.; Moshiri, Niema; Garry, Robert F. and 13 others

Source

Zenodo

Type

Dataset

Published

27 June 2024
Mutational signature dynamics indicate SARS-CoV-2's evolutionary capacity is driven by host antiviral molecules

Author

Lamb, Kieran D.; Luka, Martha M.; Saathoff, Megan; Orton, Richard J.; Phan, My V.T.; Cotten, Matthew; Yuan, Ke; Robertson, David L.

Source

PLoS Computational Biology

Type

Journal article

Published

25 January 2024
Evaluating public health effects of risk-based travel policy for the COVID-19 epidemic in Scotland

Author

McLachlan, Isobel; Huntley, Selene; Leslie, Kirsten; Bishop, Jen; Redman, Christopher; Yebra, Gonzalo; Shabaan, Sharif; Christofidis, Nicolaos; Lycett, Samantha J.; Holden, Matthew T.G. and 4 others

Source

medRxiv

Type

Journal article

Published

21 August 2023
Simulating the Evolutionary Response of a Viral Pandemic to Behaviour Change

Author

Hinsch, Martin; Silverman, Eric; Robertson, David L.

Source

ALIFE 2023: Ghost in the Machine: Proceedings of the 2023 Artificial Life Conference

Type

Conference item

Published

24 July 2023