Dataset for the manuscript: Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages.

Authors: Rowlatt, Christopher F.;

Hughes, David J.;

Gillespie, Stephen H.;

Dockrell, David H. ;

Johannessen, Ingolfur;

Bowness, Ruth;

Chaplain, Mark A.J.

Source: Zenodo

Full text

: https://doi.org/10.5281/zenodo.6514656

Abstract

Dataset for the manuscript: Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages. preprint, bioRxiv, 2022. DOI: 10.1101/2022.05.06.490883 Each zip file contains the raw computational data (as a gzip compressed tarball), YAML input files, as well as Python plotting scripts. The Python plotting scripts have dependencies on the packages: tarfile, multiprocessing, numpy, scipy, and matplotlib. Note that the Python plotting scripts plot directly from the gzip compressed tarballs. The corresponding code can be found on GitHub: https://github.com/Ruth-Bowness-Group/CAModel

Rights

https://creativecommons.org/licenses/by/4.0/legalcode

Cite as

Rowlatt, C., Hughes, D., Gillespie, S., Dockrell, D., Johannessen, I., Bowness, R. & Chaplain, M. 2022, 'Dataset for the manuscript: Modelling the within-host spread of SARS-CoV-2 infection, and the subsequent immune response, using a hybrid, multiscale, individual-based model. Part I: Macrophages.', Zenodo. https://doi.org/10.5281/zenodo.6514656

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Identifiers

DOI: https://doi.org/10.5281/zenodo.6514656

Repository URI: https://www.research.ed.ac.uk/en/datasets/e6daa6a0-fa0c-4d48-b95f-7ebb50cb76ea