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  • The Huanan seafood wholesale market in Wuhan was the early epicenter of the COVID-19 pandemic

    Author
    Worobey, Michael; Levy, Joshua I.; Malpica Serrano, Lorena; Crits-Christoph, Alexander; Pekar, Jonathan E.; Goldstein, Stephen A.; Rasmussen, Angela L.; Kraemer, Moritz U. G.; Newman, Chris; Koopmans, Marion P. G. and 8 others
    Source
    Science
    Type
    Journal article
    Published
    26 August 2022
  • Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA.1 that likely impact Spike function

    Author
    Martin, Darren P.; Lytras, Spyros; Lucaci, Alexander G.; Maier, Wolfgang; Grüning, Björn; Shank, Stephen D.; Weaver, Steven; MacLean, Oscar A.; Orton, Richard J.; Lemey, Philippe and 28 others
    Source
    Molecular Biology and Evolution
    Type
    Journal article
    Published
    01 April 2022
  • The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

    Author
    Martin, Darren P.; Weaver, Steven; Tegally, Houriiyah; San, James Emmanuel; Shank, Stephen D.; Wilkinson, Eduan; Lucaci, Alexander G.; Giandhari, Jennifer; Naidoo, Sureshnee; Pillay, Yeshnee and 12 others
    Source
    Cell
    Type
    Journal article
    Published
    07 September 2021
  • Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

    Author
    Faria, Nuno Rodrigues; Mellan, Thomas A.; Whittaker, Charles; Claro, Ingra M.; Candido, Darlan da Silva; Mishra, Swapnil; Crispim, Myuki A E; Sales, Flavia C S; Hawryluk, Iwona; McCrone, John T. and 62 others
    Source
    Science
    Type
    Journal article
    Published
    14 April 2021
  • Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

    Author
    MacLean, Oscar A.; Lytras, Spyros; Weaver, Steven; Singer, Joshua B.; Boni, Maciej F.; Lemey, Philippe; Kosakovsky Pond, Sergei L.; Robertson, David L.
    Source
    PLOS Biology
    Type
    Journal article
    Published
    01 March 2021
  • Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

    Author
    Boni, Maciej F.; Lemey, Philippe; Jiang, Xiaowei; Lam, Tommy Tsan-Yuk; Perry, Blair W.; Castoe, Todd A.; Rambaut, Andrew; Robertson, David L.
    Source
    Nature Microbiology
    Type
    Journal article
    Published
    01 November 2020
  • Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

    Author
    Lemey, Philippe; Hong, Samuel L.; Hill, Verity; Baele, Guy; Poletto, Chiara; Colizza, Vittoria; O'Toole, Áine Niamh; McCrone, John T.; Andersen, Kristian G.; Worobey, Michael and 3 others
    Source
    Nature Communications
    Type
    Journal article
    Published
    09 October 2020
  • The emergence of SARS-CoV-2 in Europe and North America

    Author
    Worobey, Michael; Pekar, Jonathan E.; Larsen, Brendan B.; Nelson, Martha I.; Hill, Verity; Joy, Jeffrey B.; Rambaut, Andrew; Suchard, Marc A.; Wertheim, Joel O.; Lemey, Philippe
    Source
    Science
    Type
    Journal article
    Published
    10 September 2020
  • Temporal signal and the phylodynamic threshold of SARS-CoV-2

    Author
    Duchene, Sebastian; Featherstone, Leo; Haritopoulou-Sinanidou, Melina; Rambaut, Andrew; Lemey, Philippe; Baele, Guy
    Source
    Virus Evolution
    Type
    Journal article
    Published
    19 August 2020
  • Evolution and epidemic spread of SARS-CoV-2 in Brazil

    Author
    Candido, Darlan da Silva; Claro, Ingra M.; de Jesus, Jaqueline G.; Souza, William M.; Moreira, Filipe R. R.; Dellicour, Simon; Mellan, Thomas A.; du Plessis, Louis; Pereira, Rafael H.M.; Sales, Flavia C. S. and 68 others
    Source
    Science
    Type
    Journal article
    Published
    23 July 2020

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