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Showing 14 results

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Author

Pekar, Jonathan E.; Lytras, Spyros; Ghafari, Mahan; Magee, Andrew F.; Parker, Edyth; Wang, Yu; Ji, Xiang; Havens, Jennifer L.; Katzourakis, Aris; Vasylyeva, Tetyana I. and 9 others

Source

Cell

Type

Journal article

Published

07 May 2025
Data and Code for "Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic"

Author

Crits-Christoph, Alexander; Levy, Joshua I.; Pekar, Jonathan E.; Goldstein, Stephen A.; Singh, Reema; Hensel, Zach; Gangavarapu, Karthik; Rogers, Matthew B.; Moshiri, Niema; Garry, Robert F. and 13 others

Source

Zenodo

Type

Dataset

Published

27 June 2024
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Author

Tsui, Joseph; McCrone, John T.; Lambert, Ben C.; Bajaj, Sumali; Inward, Rhys; Bosetti, Paolo; Pena, Rosario Evans; Tegally, Houriiyah; Hill, Verity; Zarebski, Alexander E. and 30 others

Source

Science

Type

Journal article

Published

20 July 2023
The Huanan seafood wholesale market in Wuhan was the early epicenter of the COVID-19 pandemic

Author

Worobey, Michael; Levy, Joshua I.; Malpica Serrano, Lorena; Crits-Christoph, Alexander; Pekar, Jonathan E.; Goldstein, Stephen A.; Rasmussen, Angela L.; Kraemer, Moritz U.G.; Newman, Chris; Koopmans, Marion P.G. and 8 others

Source

Science

Type

Journal article

Published

26 August 2022
Selection analysis identifies clusters of unusual mutational changes in Omicron lineage BA.1 that likely impact Spike function

Author

Martin, Darren P.; Lytras, Spyros; Lucaci, Alexander G.; Maier, Wolfgang; Grüning, Björn; Shank, Stephen D.; Weaver, Steven; MacLean, Oscar A.; Orton, Richard J.; Lemey, Philippe and 28 others

Source

Molecular Biology and Evolution

Type

Journal article

Published

01 April 2022
The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

Author

Martin, Darren P.; Weaver, Steven; Tegally, Houriiyah; San, James E.; Shank, Stephen D.; Wilkinson, Eduan; Lucaci, Alexander G.; Giandhari, Jennifer; Naidoo, Sureshnee; Pillay, Yeshnee and 12 others

Source

Cell

Type

Journal article

Published

07 September 2021
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil

Author

Faria, Nuno Rodrigues; Mellan, Thomas A.; Whittaker, Charles; Claro, Ingra M.; da Silva Candido, Darlan; Mishra, Swapnil; Crispim, Myuki A.E.; Sales, Flávia Cristina Silva; Hawryluk, Iwona; McCrone, John T. and 62 others

Source

Science

Type

Journal article

Published

14 April 2021
Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

Author

MacLean, Oscar A.; Lytras, Spyros; Weaver, Steven; Singer, Joshua B.; Boni, Maciej F.; Lemey, Philippe; Kosakovsky Pond, Sergei L.; Robertson, David L.

Source

PLOS Biology

Type

Journal article

Published

01 March 2021
Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic

Author

Boni, Maciej F.; Lemey, Philippe; Jiang, Xiaowei; Lam, Tommy Tsan-Yuk; Perry, Blair W.; Castoe, Todd A.; Rambaut, Andrew; Robertson, David L.

Source

Nature Microbiology

Type

Journal article

Published

01 November 2020
Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2

Author

Lemey, Philippe; Hong, Samuel L.; Hill, Verity; Baele, Guy; Poletto, Chiara; Colizza, Vittoria; O'Toole, Áine Niamh; McCrone, John T.; Andersen, Kristian G.; Worobey, Michael and 3 others

Source

Nature Communications

Type

Journal article

Published

09 October 2020