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Showing 17 results

Genomics-informed outbreak investigations of SARS-CoV-2 using civet

Author

O'Toole, Áine Niamh; Hill, Verity; Jackson, Ben; Dewar, Rebecca; Sahadeo, Nikita; Colquhoun, Rachel M.; Rooke, Stefan; McCrone, John T.; Duggan, Kate; McHugh, Martin P. and 12 others

Source

PLOS Global Public Health

Type

Journal article

Published

09 December 2022
Statistical and agent-based modelling of the transmissibility of different SARS-CoV-2 variants in England and impact of different interventions

Author

Panovska-Griffiths, Jasmina; Swallow, Ben; Hinch, R.; Cohen, Jonathan; Rosenfield, K.; Stuart, R.M.; Ferretti, Luca; di Lauro, F.; Wymant, C.; Izzo, A. and 7 others

Source

Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

Type

Journal article

Published

03 October 2022
SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway

Author

Willett, Brian J.; Grove, Joe; MacLean, Oscar A.; Wilkie, Craig; de Lorenzo, Giuditta; Furnon, Wilhelm; Cantoni, Diego; Scott, Sam; Logan, Nicola; Ashraf, Shirin and 33 others

Source

Nature Microbiology

Type

Journal article

Published

07 July 2022
Protocol for the COG-UK hospital-onset COVID-19 infection (HOCI) multicentre interventional clinical study: evaluating the efficacy of rapid genome sequencing of SARS-CoV-2 in limiting the spread of COVID-19 in UK NHS hospitals

Author

Blackstone, James; Stirrup, Oliver; Mapp, Fiona; Panca, Monica; Copas, Andrew J.; Flowers, Paul; Hockey, Leanne; Price, James R.; Partridge, David G.; Peters, Christine and 6 others

Source

BMJ Open

Type

Journal article

Published

19 April 2022
Tracking SARS-CoV-2 mutations and variants through the COG-UK-Mutation Explorer

Author

Wright, Derek W.; Harvey, William T.; Hughes, Joseph; Cox, MacGregor; Peacock, Thomas P.; Colquhoun, Rachel M.; Jackson, Ben; Orton, Richard J.; The COVID-19 Genomics UK (COG-UK) Consortium; Harrison, Ewen M. and 5 others

Source

Virus Evolution

Type

Journal article

Published

18 March 2022
Genomic assessment of quarantine measures to prevent SARS-CoV-2 importation and transmission

Author

Aggarwal, Dinesh; Page, Andrew J.; Schaefer, Ulf; Savva, George M.; Myers, Richard; Volz, Erik; Ellaby, Nicholas; Platt, Steve; Groves, Natalie; Gallagher, Eileen and 11 others

Source

Nature Communications

Type

Journal article

Published

23 February 2022
The SARS-CoV-2 Alpha variant caused increased clinical severity of disease in Scotland: a genomics-based prospective cohort analysis

Author

Pascall, David J.; Mollett, Guy; Vink, Elen; Shepherd, James G.; Williams, Thomas; Wastnedge, Elizabeth; Blacow, Rachel; Hughes, Joseph; Robertson, David L.; Lycett, Samantha J. and 24 others

Source

medRxiv

Type

Journal article

Published

21 February 2022
Publisher Correction: Characterising within-hospital SARS-CoV-2 transmission events using epidemiological and viral genomic data across two pandemic waves

Author

Lindsey, Benjamin B.; Villabona-Arenas, C. Julian; Campbell, Finlay; Keeley, Alexander J.; Parker, Matthew D.; Shah, Dhruv R.; Parsons, Helena; Zhang, Peijun; Kakkar, Nishchay; Gallis, Marta and 18 others

Source

Nature Communications

Type

Journal article

Published

17 February 2022
The hyper-transmissible SARS-CoV-2 Omicron variant exhibits significant antigenic change, vaccine escape and a switch in cell entry mechanism

Author

Willett, Brian J.; Grove, Joe; MacLean, Oscar A.; Wilkie, Craig; Logan, Nicola; de Lorenzo, Giuditta; Furnon, Wilhelm; Scott, Sam; Manali, Maria; Szemiel, Agnieszka and 25 others

Source

medRxiv

Type

Journal article

Published

26 January 2022
Lineage replacement and evolution captured by the United Kingdom Covid Infection Survey

Author

Lythgoe, Katrina A.; Golubchik, Tanya; Hall, Matthew; House, Thomas; MacIntyre-Cockett, George; Fryer, Helen; Thomson, Laura; Nurtay, Anel; Buck, David; Green, Angie and 23 others

Source

medRxiv

Type

Journal article

Published

06 January 2022