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Showing 141 results

Insights into the implementation of a whole genome sequencing report form (SRF) to reduce nosocomial SARS-CoV-2 in UK hospitals within an unfolding pandemic: a qualitative process evaluation using normalisation process theory (1)

Author

Leiser, Ruth; McLeod, Julie; Mapp, Fiona; Stirrup, Oliver; Blackstone, James; Illingworth, Christopher J.R.; Nebbia, Gaia; Price, James R.; Snell, Luke B.; Saluja, Tranprit and 2 others

Source

PLoS ONE

Type

Journal article

Published

17 April 2025
Pathogen genomic surveillance and the AI revolution

Author

Lytras, Spyros; Lamb, Kieran D.; Ito, Jumpei; Grove, Joe; Yuan, Ke; Sato, Kei; Hughes, Joseph; Robertson, David L.

Source

Journal of Virology

Type

Journal article

Published

29 January 2025
Phenotypic evolution of SARS-CoV-2 spike during the COVID-19 pandemic

Author

Furnon, Wilhelm; Cowton, Vanessa M.; de Lorenzo, Giuditta; Orton, Richard J.; Herder, Vanessa; Cantoni, Diego; Ilia, Georgios; Correa Mendonca, Diogo; Kerr, Karen; Allan, Jay and 16 others

Source

Nature Microbiology

Type

Journal article

Published

03 January 2025
Genomic epidemiology of early SARS-CoV-2 transmission dynamics in Bangladesh

Author

Carnegie, L.; McCrone, John T.; du Plessis, Louis; Hasan, M.; Ali, M.Z.; Begum, R.; Hassan, M.Z.; Islam, S.; Rahman, M.H.; Uddin, A.S.M. and 21 others

Source

Virology Journal

Type

Journal article

Published

13 November 2024
Genomic epidemiology and immune escape of SARS-CoV-2 recombinant strains circulating in Botswana

Author

Choga, Wonderful T.; Gobe, Irene; Seru, Kedumetse; Maruapula, Dorcas; Ndlovu, Nokuthula S.; Zuze, Boitumelo; Motshosi, Patience; Matsuru, Teko; Sabone, Phenyo; Yu, Xiaoyu and 5 others

Source

IJID Regions

Type

Journal article

Published

02 November 2024
Stratified analyses refine association between TLR7 rare variants and severe COVID-19

Author

Coughlan, Eamon; Pairo-Castineira, Erola; Baillie, J. Kenneth; Boos, Jannik; Ramakrishnan, Gayatri; Asselta, Rosanna; Löscher, Britt-Sabina; Valenti, Luca; de Cid, Rafael; Bujanda, Luis and 21 others

Source

Human Genetics and Genomics Advances

Type

Journal article

Published

28 June 2024
Non-SARS-CoV-2 respiratory viral detection and whole genome sequencing from COVID-19 rapid antigen test devices: a laboratory evaluation study

Author

Moso, Michael A; Taiaroa, George; Steinig, Eike; Zhanduisenov, Madiyar; Butel-Simoes, Grace; Savic, Ivana; Taouk, Mona L; Chea, Socheata; Moselen, Jean; O'Keefe, Jacinta and 12 others

Source

The Lancet Microbe

Type

Journal article

Published

12 February 2024
A framework for automated scalable designation of viral pathogen lineages from genomic data

Author

McBroome, Jakob; de Bernardi Schneider, Adriano; Roemer, Cornelius; Wolfinger, Michael T.; Hinrichs, Angie S.; O'Toole, Áine Niamh; Ruis, Christopher; Turakhia, Yatish; Rambaut, Andrew; Corbett-Detig, Russell

Source

Nature Microbiology

Type

Journal article

Published

05 February 2024
Differential RNA editing landscapes in host cell versus the SARS-CoV-2 genome

Author

Kurkowiak, Małgorzata; Fletcher, Sarah; Daniels, Alison; Mozolewski, Paweł; Silvestris, Domenico Alessandro; Król, Ewelina; Marek-Trzonkowska, Natalia; Hupp, Ted; Tait-Burkard, Christine

Source

iScience

Type

Journal article

Published

17 November 2023
SCORPIO: a utility for defining and classifying mutation constellations of virus genomes

Author

Jackson, Ben; O'Toole, Áine Niamh; Rambaut, Andrew; Colquhoun, Rachel M.

Source

Bioinformatics

Type

Journal article

Published

15 September 2023