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Showing 151 results

A phylogenetics and variant calling pipeline to support SARS-CoV-2 genomic epidemiology in the UK

Author

Colquhoun, Rachel M.; O’Toole, Áine; Hill, Verity; Yu, Xiaoyu; Poplawski, Radoslaw; Whalley, Thomas; Groves, Natalie; Ellaby, Nicholas; Loman, Nick; Connor, Tom and 3 others

Source

Virus Evolution

Type

Journal article

Published

17 October 2024
Stratified analyses refine association between TLR7 rare variants and severe COVID-19

Author

Coughlan, Eamon; Pairo-Castineira, Erola; Baillie, J. Kenneth; Boos, Jannik; Ramakrishnan, Gayatri; Asselta, Rosanna; Löscher, Britt-Sabina; Valenti, Luca; de Cid, Rafael; Bujanda, Luis and 21 others

Source

Human Genetics and Genomics Advances

Type

Journal article

Published

28 June 2024
Lack of association between classical HLA genes and asymptomatic SARS-CoV-2 infection

Author

Marchal, Astrid; Cirulli, Elizabeth T.; Neveux, Iva; Bellos, Evangelos; Thwaites, Ryan S.; Schiabor Barrett, Kelly M.; Zhang, Yu; Nemes-Bokun, Ivana; Kalinova, Mariya; Catchpole, Andrew and 11 others

Source

Human Genetics and Genomics Advances

Type

Journal article

Published

26 April 2024
Non-SARS-CoV-2 respiratory viral detection and whole genome sequencing from COVID-19 rapid antigen test devices: a laboratory evaluation study

Author

Moso, Michael A.; Taiaroa, George; Steinig, Eike; Zhanduisenov, Madiyar; Butel-Simoes, Grace; Savic, Ivana; Taouk, Mona L.; Chea, Socheata; Moselen, Jean; O'Keefe, Jacinta and 12 others

Source

The Lancet Microbe

Type

Journal article

Published

12 February 2024
A framework for automated scalable designation of viral pathogen lineages from genomic data

Author

McBroome, Jakob; de Bernardi Schneider, Adriano; Roemer, Cornelius; Wolfinger, Michael T.; Hinrichs, Angie S.; O'Toole, Áine Niamh; Ruis, Christopher; Turakhia, Yatish; Rambaut, Andrew; Corbett-Detig, Russell

Source

Nature Microbiology

Type

Journal article

Published

05 February 2024
Differential RNA editing landscapes in host cell versus the SARS-CoV-2 genome

Author

Kurkowiak, Małgorzata; Fletcher, Sarah; Daniels, Alison; Mozolewski, Paweł; Silvestris, Domenico Alessandro; Król, Ewelina; Marek-Trzonkowska, Natalia; Hupp, Ted; Tait-Burkard, Christine

Source

iScience

Type

Journal article

Published

17 November 2023
SCORPIO: a utility for defining and classifying mutation constellations of virus genomes

Author

Jackson, Ben; O'Toole, Áine Niamh; Rambaut, Andrew; Colquhoun, Rachel M.

Source

Bioinformatics

Type

Journal article

Published

15 September 2023
A second update on mapping the human genetic architecture of COVID-19

Author

The COVID-19 Host Genetics Initiative

Source

Nature

Type

Journal article

Published

06 September 2023
Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Author

Tsui, Joseph; McCrone, John T.; Lambert, Ben C.; Bajaj, Sumali; Inward, Rhys; Bosetti, Paolo; Pena, Rosario Evans; Tegally, Houriiyah; Hill, Verity; Zarebski, Alexander E. and 30 others

Source

Science

Type

Journal article

Published

20 July 2023
Genomic epidemiology of SARS-CoV-2 variants during the first two years of the pandemic in Colombia

Author

Jimenez-Silva, Cinthy; Rivero, Ricardo; Douglas, Jordan; Bouckaert, Remco; Villabona-Arenas, C. Julian; Atkins, Katherine E.; Gastelbondo, Bertha; Calderon, Alfonso; Guzman, Camilo; Echeverri-De la Hoz, Daniel and 11 others

Source

Communications Medicine

Type

Journal article

Published

13 July 2023